Biopython alternatives and similar packages

Based on the "Science and Data Analysis" category.
Alternatively, view Biopython alternatives based on common mentions on social networks and blogs.

• Pandas

  9.9 10.0 L2 Biopython VS Pandas

  Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
  

• NumPy

  9.8 10.0 L1 Biopython VS NumPy

  The fundamental package for scientific computing with Python.
  

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• SciPy

  9.4 9.9 L2 Biopython VS SciPy

  SciPy library main repository
  

• SymPy

  9.4 10.0 L2 Biopython VS SymPy

  A computer algebra system written in pure Python
  

• NetworkX

  9.4 9.6 L3 Biopython VS NetworkX

  Network Analysis in Python
  

• Dask

  9.2 9.7 L2 Biopython VS Dask

  Parallel computing with task scheduling
  

• statsmodels

  9.2 9.4 L3 Biopython VS statsmodels

  Statsmodels: statistical modeling and econometrics in Python
  

• Numba

  8.9 9.9 L3 Biopython VS Numba

  NumPy aware dynamic Python compiler using LLVM
  

• PyMC

  8.9 9.5 L4 Biopython VS PyMC

  Bayesian Modeling and Probabilistic Programming in Python
  

• Getting Started

  8.7 9.6 Biopython VS Getting Started

  PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis
  

• astropy

  8.2 9.9 L2 Biopython VS astropy

  Astronomy and astrophysics core library
  

• orange

  8.1 9.6 L2 Biopython VS orange

  🍊 :bar_chart: :bulb: Orange: Interactive data analysis
  

• Interactive Parallel Computing with IPython

  7.4 8.2 L3 Biopython VS Interactive Parallel Computing with IPython

  IPython Parallel: Interactive Parallel Computing in Python
  

• blaze

  7.3 0.0 L4 Biopython VS blaze

  NumPy and Pandas interface to Big Data
  

• RDKit

  7.1 9.5 L1 Biopython VS RDKit

  The official sources for the RDKit library
  

• Cubes

  5.9 0.0 L3 Biopython VS Cubes

  [NOT MAINTAINED] Light-weight Python OLAP framework for multi-dimensional data analysis
  

• Open Mining

  5.7 0.0 L3 Biopython VS Open Mining

  DISCONTINUED. Business Intelligence (BI) in Python, OLAP
  

• #<Sawyer::Resource:0x00007f547e829e00>

  5.6 6.7 Biopython VS #<Sawyer::Resource:0x00007f547e829e00>

  A unified interface for distributed computing. Fugue executes SQL, Python, Pandas, and Polars code on Spark, Dask and Ray without any rewrites.
  

• NIPY

  5.4 8.9 L3 Biopython VS NIPY

  Workflows and interfaces for neuroimaging packages
  

• bcbio-nextgen

  5.4 6.7 L3 Biopython VS bcbio-nextgen

  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  

• bcolz

  4.7 0.0 Biopython VS bcolz

  DISCONTINUED. A columnar data container that can be compressed.
  

• bccb

  4.5 4.4 L4 Biopython VS bccb

  Incubator for useful bioinformatics code, primarily in Python and R

• Neupy

  4.4 0.0 L5 Biopython VS Neupy

  NeuPy is a Tensorflow based python library for prototyping and building neural networks

• Bubbles

  3.6 0.0 L5 Biopython VS Bubbles

  [NOT MAINTAINED] Bubbles – Python ETL framework

• PyDy

  3.5 3.9 L3 Biopython VS PyDy

  Multibody dynamics tool kit.
  

• harold

  2.4 1.8 L2 Biopython VS harold

  An open-source systems and controls toolbox for Python3

• signac

  2.4 8.3 Biopython VS signac

  Manage large and heterogeneous data spaces on the file system.
  

• PatZilla

  2.1 5.4 Biopython VS PatZilla

  PatZilla is a modular patent information research platform and data integration toolkit with a modern user interface and access to multiple data sources.
  

• LynxKite

  2.1 4.3 Biopython VS LynxKite

  The complete graph data science platform
  

• Kotori

  2.0 6.3 Biopython VS Kotori

  A flexible data historian based on InfluxDB, Grafana, MQTT, and more. Free, open, simple.
  

• Terkin

  1.8 0.0 Biopython VS Terkin

  Datalogger for MicroPython and CPython.
  

• dask-memusage

  0.9 0.0 Biopython VS dask-memusage

  A low-impact profiler to figure out how much memory each task in Dask is using

• cclib

  0.9 Biopython VS cclib

  A library for parsing and interpreting the results of computational chemistry packages.

• ElasticBatch

  0.8 0.0 Biopython VS ElasticBatch

  Elasticsearch tool for easily collecting and batch inserting Python data and pandas DataFrames

• Open Babel

  - Biopython VS Open Babel

  A chemical toolbox designed to speak the many languages of chemical data.

* Code Quality Rankings and insights are calculated and provided by Lumnify.
They vary from L1 to L5 with "L5" being the highest.

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