Biopython alternatives and similar packages

Based on the "Science and Data Analysis" category.
Alternatively, view Biopython alternatives based on common mentions on social networks and blogs.

• Pandas

  9.9 10.0 L2 Biopython VS Pandas

  Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
  

• NumPy

  9.7 9.9 L1 Biopython VS NumPy

  The fundamental package for scientific computing with Python.
  

Write Clean Python Code. Always.

Sonar helps you commit clean code every time. With over 225 unique rules to find Python bugs, code smells & vulnerabilities, Sonar finds the issues while you focus on the work.

Promo www.sonarsource.com



• NetworkX

  9.4 9.3 L3 Biopython VS NetworkX

  Network Analysis in Python
  

• SciPy

  9.4 9.9 L2 Biopython VS SciPy

  SciPy library main repository
  

• SymPy

  9.4 9.9 L2 Biopython VS SymPy

  A computer algebra system written in pure Python
  

• statsmodels

  9.2 9.6 L3 Biopython VS statsmodels

  Statsmodels: statistical modeling and econometrics in Python
  

• Dask

  9.2 9.8 L2 Biopython VS Dask

  Parallel computing with task scheduling
  

• PyMC

  8.9 9.3 L4 Biopython VS PyMC

  Bayesian Modeling in Python
  

• Numba

  8.8 9.9 L3 Biopython VS Numba

  NumPy aware dynamic Python compiler using LLVM
  

• astropy

  8.2 9.9 L2 Biopython VS astropy

  Astronomy and astrophysics core library
  

• orange

  8.1 9.7 L2 Biopython VS orange

  🍊 :bar_chart: :bulb: Orange: Interactive data analysis
  

• Interactive Parallel Computing with IPython

  7.5 7.8 L3 Biopython VS Interactive Parallel Computing with IPython

  IPython Parallel: Interactive Parallel Computing in Python
  

• blaze

  7.4 0.0 L4 Biopython VS blaze

  NumPy and Pandas interface to Big Data
  

• RDKit

  6.9 8.6 L1 Biopython VS RDKit

  The official sources for the RDKit library
  

• Cubes

  6.0 0.0 L3 Biopython VS Cubes

  Light-weight Python OLAP framework for multi-dimensional data analysis
  

• Open Mining

  5.7 0.0 L3 Biopython VS Open Mining

  Business Intelligence (BI) in Python, OLAP
  

• bcbio-nextgen

  5.4 3.2 L3 Biopython VS bcbio-nextgen

  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  

• NIPY

  5.3 9.2 L3 Biopython VS NIPY

  Workflows and interfaces for neuroimaging packages
  

• bcolz

  4.8 0.0 Biopython VS bcolz

  A columnar data container that can be compressed.
  

• bccb

  4.5 0.0 L4 Biopython VS bccb

  Incubator for useful bioinformatics code, primarily in Python and R

• Neupy

  4.4 0.0 L5 Biopython VS Neupy

  NeuPy is a Tensorflow based python library for prototyping and building neural networks

• Bubbles

  3.6 0.0 L5 Biopython VS Bubbles

  [NOT MAINTAINED] Bubbles – Python ETL framework

• PyDy

  3.5 0.0 L3 Biopython VS PyDy

  Multibody dynamics tool kit.
  

• harold

  2.3 5.0 L2 Biopython VS harold

  An open-source systems and controls toolbox for Python3

• signac

  2.3 7.1 Biopython VS signac

  Manage large and heterogeneous data spaces on the file system.
  

• LynxKite

  2.1 9.7 Biopython VS LynxKite

  The complete graph data science platform
  

• PatZilla

  1.9 4.8 Biopython VS PatZilla

  PatZilla is a modular patent information research platform and data integration toolkit with a modern user interface and access to multiple data sources.
  

• Kotori

  1.8 3.6 Biopython VS Kotori

  A flexible data historian based on InfluxDB, Grafana, MQTT, and more. Free, open, simple.
  

• Terkin

  1.7 0.0 Biopython VS Terkin

  Terkin-Datalogger for MicroPython and CPython
  

• cclib

  0.9 Biopython VS cclib

  A library for parsing and interpreting the results of computational chemistry packages.

• ElasticBatch

  0.8 0.0 Biopython VS ElasticBatch

  Elasticsearch tool for easily collecting and batch inserting Python data and pandas DataFrames

• dask-memusage

  0.8 0.0 Biopython VS dask-memusage

  A low-impact profiler to figure out how much memory each task in Dask is using

• Open Babel

  - Biopython VS Open Babel

  A chemical toolbox designed to speak the many languages of chemical data.

* Code Quality Rankings and insights are calculated and provided by Lumnify.
They vary from L1 to L5 with "L5" being the highest.

Do you think we are missing an alternative of Biopython or a related project?

Access the most powerful time series database as a service sponsored www.influxdata.com

Popular Comparisons

• Biopython
  vs
  RDKit
• Biopython
  vs
  Numba
• Biopython
  vs
  Pandas
• Biopython
  vs
  Open Babel
• Biopython
  vs
  statsmodels

SaaSHub - Software Alternatives and Reviews sponsored www.saashub.com