bcbio-nextgen v1.1.5 Release Notes
Release Date: 2019-04-12 // about 5 years ago-
- 🛠 Fixes for Python3 incompatibilities on distributed IPython runs.
- Numerous smaller Python3 incompatibilities with strings/unicode and types. Thanks to the community for reporting these.
- GATK HaplotypeCaller: correctly apply skipping of marked duplicates only for amplicon runs. Thanks to Ben Liesfeld.
- 🛠 Fix format detection for bzip2 fastq inputs.
- 👌 Support latest GATK4 MuTect2 (4.1.1.0) with changes to ploidy and reference parameters.
- 👌 Support changes to GATK4 for VQSR --resource specification in 4.1.1.0. Thanks to Timothee Cezard.
- 👌 Support latest bedtools (2.28.0) which expects SAM heads for bgzipped BED inputs.