bcbio-nextgen v1.2.2 Release Notes

Release Date: 2020-04-05 // almost 4 years ago
    • 🛠 Fix for not properly looking up R environment variables in the base environment.
    • ✂ Remove --use-new-qual-calculator which was eliminated in GATK 4.1.5.0.
    • 0️⃣ Ensure header is not written for a Series. In pandas 0.24.0 the default for header was changed from
      False to True so we have to set it explictly now.
    • ✂ Remove unused Dockerfile. Thanks to @matthdsm.
    • ATAC-seq: Skip peak-calling on fractions with < 1000 reads.