« Changelog History


bcbio-nextgen v1.1.8 Release Notes

Release Date: 2019-10-29 // over 4 years ago
    • ➕ Add antibody configuration option. Setting a specific antibody for ChIP-seq will use appropriate
      📚 settings for that antibody. See the documentation for supported antibodies.
    • Add use_lowfreq_filter for forcing vardict to report variants with low allelic frequency,
      👉 useful for calling somatic variants in panels with high coverage.
    • 🛠 Fix for checking for pre-existing inputs with python3.
    • ➕ Add keep_duplicates option for ChIP/ATAC-seq which does not remove duplicates before peak calling.
      0️⃣ Defaults to False.
    • ➕ Add keep_multimappers for ChIP/ATAC-seq which does not remove multimappers before peak calling.
      0️⃣ Defaults to False.
    • ✂ Remove ethnicity as a required column in PED files.